Top Stories - Apoptosis & Cell Death Research

Burnham Institute - Researchers at work
Oncothyreon helps bring...

Sanford-Burnham has just entered a new agreement with Oncothyreon Inc that will allow the...

Dr. Kristiina Vuori and Dr. John Reed are working to find new ways to help cancer cells die.
Cells in the balance

May is National Cancer Research Month, created by Congress in 2007 to recognize the American...

Dr. Guy Salvesen
FLIP-ing the cell death switch

Cells come and go throughout our lifetime. Some live a long time (like brain cells), while others...

3D representation of a protein, a known cancer drug target. The protein's pocket (center, in pink) holds matching fragments identified by MEDIT software. The software will then further analyze these fragments to build new anti-cancer compounds that bind the protein
Drug design in 3D

Let’s say you are a scientist studying Protein X, a protein that normally tells cells to divide...

Meet a cancer researcher: Guy Salvesen

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On June 5, 2012, California voters will have an opportunity to consider Proposition 29, also known as the California Cancer Research Act. Prop 29’s goal is to provide funding for cancer research by increasing the tax on a pack of cigarettes by $1. Sanford-Burnham’s Board of Trustees endorsed Prop 29 in September 2011. The University of California Regents has also voted to support it, along with the American Cancer Society, American Lung Association, American Heart Association, Stand Up To Cancer, and the Lance Armstrong Foundation (Livestrong).

We are presenting a series of blog posts to allow you to meet some of our cancer researchers and gain a better understanding of how the projected $735 million generated annually by the passing of Prop 29 would benefit cancer research in California.

Meet Guy Salvesen, Ph.D., professor and director of the Apoptosis & Cell Death Program in Sanford-Burnham’s National Cancer Institute-designated Cancer Center.

Drug discovery case study: invadopodia and cancer metastasis

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Editor’s note: this is the first in a series of posts highlighting drug screening studies in our Conrad Prebys Center for Chemical Genomics. Read the second post here.

To metastasize, some types of cancer cells rely on invadopodia, cellular membrane projections that help them “walk” away from the primary tumor. To determine how cells control invadopodia formation, scientists at Sanford-Burnham took advantage of the technology and expertise of the Institute’s Conrad Prebys Center for Chemical Genomics to screen a collection of pharmacologically active compounds to identify those that either promote or inhibit the process.

The study identified several compounds that block invadopodia and found that many of the compounds targeted Cdks, a family of enzymes that were not previously associated with invadopodia. One of these enzymes, Cdk5, is required for the formation and function of invadopodia and for cellular invasion.

3D look at protein family with a long Sanford-Burnham history

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Sanford-Burnham has a long history with proteins of the so-called Cas family, particularly one member called p130Cas. For more than a decade, some of our top researchers, including Kristiina Vuori, M.D., Ph.D., Erkki Ruoslahti, M.D., Ph.D., and Elena Pasquale, Ph.D., have studied the biology of these proteins and the role they play in cancer. And they made several groundbreaking findings.

One of these was the co-discovery of a family of novel cell-regulating proteins that interact with Cas proteins, called the NSP family. When Cas and NSP proteins get together, they help a cell migrate or invade surrounding tissues—processes that can be either beneficial, as when immune cells mature, or harmful, as when a cancer cell metastasizes. Furthermore, one particular pair of Cas and NSP proteins were found to cause breast cancer cells to become resistant to anti-estrogen drugs such as tamoxifen, one of the major challenges in fighting this devastating disease.

Two Sanford-Burnham researchers named AAAS Fellows

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Sanford-Burnham is a highly collaborative institute, embracing opportunities to connect with scientists nationwide, so perhaps the greatest honor our researchers can receive is the recognition of their peers. Our CEO John C. Reed, M.D., Ph.D., and Director of our Del E. Webb Neuroscience, Aging and Stem Cell Research Center, Stuart A. Lipton, M.D., Ph.D., have been named as Fellows of the American Association for the Advancement of Science (AAAS). Fellows are recognized for meritorious efforts to advance science or its applications. This year’s honorees were formally announced today in the AAAS News & Notes section of the journal Science.

Oncothyreon helps bring potential cancer drug from lab to patients

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Sanford-Burnham has entered an agreement with Oncothyreon Inc that will allow the biotechnology company to develop sabutoclax, a chemical discovered as a result of research in the laboratories of Dr. Maurizio Pellecchia and Dr. John Reed, into a potential new anti-cancer drug. Sabutoclax inhibits a family of proteins called Bcl-2, which helps cells avoid self-destructing in a process known as apoptosis. By tempering Bcl-2, sabutoclax shows great promise in blocking cancer cell growth.

“Overexpression of one or more members of the Bcl-2 family of proteins is common in most human cancers,” said Dr. Scott Peterson, Vice President of Research and Development at Oncothyreon. “This overexpression prevents the type of cell death known as apoptosis, resulting in resistance to many frequently used cancer treatments.  By blocking Bcl-2 protein function, sabutoclax induces apoptosis in tumor cells and increases the activity of chemotherapy. Sabutoclax inhibits all of the Bcl-2 protein family members, which may prove advantageous when compared with other compounds directed at these targets.”

“We are confident that we have found a strong development partner in the Oncothyreon team that is dedicated to advancing sabutoclax into the clinic for patients battling with cancer,” said Dr. Reed, who has extensively published on the role of Bcl-2 proteins in cancer and also serves as Sanford-Burnham’s CEO.

Cells in the balance

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May is National Cancer Research Month, created by Congress in 2007 to recognize the American Association of Cancer Research (AACR) for its contributions to the field. To honor AACR and highlight some of the important cancer research being done at Sanford-Burnham, throughout May we posted a series of articles on the ongoing work in our National Cancer Institute-designated Cancer Center. The vast majority of this research is made possible by funding from the National Institutes of Health (NIH), which includes the National Cancer Institute (NCI).

Cells contain a complex mixture of opposing forces striving for balance. When these mechanisms work properly, cells are healthy. However, if one side gains the upper hand, balance is lost and disease can result.

Programmed cell death, or apoptosis, is a critical cellular quality control mechanism regulated by small squads of pro- and anti-apoptotic proteins. In healthy cells, these opposing mechanisms maintain the life/death balance. However, they can also go awry in a number of diseases. In particular, cancers often over-express anti-apoptotic proteins, giving them a measure of immortality.

Sanford-Burnham’s NCI-designated Cancer Center has led the way on cell death research. In a recent paper, Dr. Guy Salvesen, who directs the Apoptosis and Cell Death Program, and colleagues showed how an enzyme, caspase-8, can teeter between advancing or defeating apoptosis, depending on factors in the cell. Caspases are critical regulators of apoptosis, and understanding their function could lead to new treatments.

Leaders among peers

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Sanford-Burnham scientists are leading several exciting symposia over the next few months. Please follow the links below for more event and registration information.

2011 Signaling, Metabolism and Hypoxia Symposium
Chaired by Dr. Ze’ev Ronai

May 6, 2011, 2:00 – 5:30 p.m. (PDT)
Sanford-Burnham Medical Research Institute
10901 North Torrey Pines Road
La Jolla, California

2011 Glycobiology Gordon Research Conference
Chaired by Dr. Hudson Freeze

May 8 – 13, 2011
Il Ciocco Hotel
Lucca (Barga), Italy

Sanford-Burnham’s 33rd Annual Symposium: Structural Systems Biology
Chaired by members of the Bioinformatics and Systems Biology Program
Drs. Adam Godzik, Dorit Hanein, Andrei Osterman, Niels Volkmann

June 7, 2011, 9:00 a.m. – 5:15 p.m. (PDT)
Hilton La Jolla Torrey Pines
La Jolla, California

Cardiomyocyte Regeneration and Protection
Chaired by Dr. Mark Mercola

Sponsored by Abcam
June 20 – 21, 2011
Hilton La Jolla Torrey Pines
La Jolla, California

2011 Molecular Therapeutics of Cancer Research Conference
Chaired by Dr. Sara Courtneidge

Sponsored by the Cancer Molecular Therapeutics Research Association
July 10 – 14, 2011
Asilomar Conference Center
Pacific Grove, California

Seventh General Meeting of the International Proteolysis Society
Chaired by Dr. Guy Salvesen and Dr. Matthew Bogyo

October 16 – 20, 2011
Hilton San Diego Resort and Spa
San Diego, California

FLIP-ing the cell death switch

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Cells come and go throughout our lifetime. Some live a long time (like brain cells), while others constantly grow, divide and die. Cell death is a process that must be carefully managed – too many cells dying in the brain leads to neurodegenerative diseases like Alzheimer’s, while not enough cell death allows tumors to form. But not all cell death is the same. Apoptosis, often called “programmed cell death”, is neat and clean – seppuku-style cell suicide. Necrosis, on the other hand, is the messy, unplanned version of cell death – the kind that might cause pain and swelling.

Apoptosis begins by activating enzymes known as caspases, setting the cell on the path towards death – a good thing if they are cancer cells or cells infected with a virus. One caspase, known as caspase-8, is a double agent of apoptosis – depending on the conditions, it can promote either cell death or cell survival. What makes caspases-8 choose a side? A new study led by Dr. Douglas Green at St. Jude Children’s Research Hospital and Sanford-Burnham’s Dr. Guy Salvesen points the finger at a protein called FLIPL. Their study was published online March 2 in the journal Nature.

“We’ve known for some time that caspase-8 can play this dual role, but we didn’t know the molecular basis for the opposing functions. Knowing the mechanism may allow us to design therapies to defeat a cancer cell’s quest for immortality,” says Dr. Salvesen, director of the Apoptosis and Cell Death Research Program and dean of the Graduate School of Biomedical Sciences at Sanford-Burnham.

Drug design in 3D

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Let’s say you are a scientist studying Protein X, a protein that normally tells cells to divide but, when malfunctioning,  causes unchecked cell division that leads to a tumor. You think blocking this deviant Protein X might stop cancer. So you take Protein X to your colleagues in Sanford-Burnham’s Conrad Prebys Center for Chemical Genomics(Prebys Center), where robotic systems can screen hundreds of thousands  of chemical compounds to find that one needle-in-a-haystack (or handful of needles) that inhibit Protein X. From there, you continue developing these winning compounds, hopefully into a new anti-cancer drug.To boost the Prebys Center’s drug discovery efforts,  scientists in Dr. Nicholas Cosford’s laboratory, part of Sanford-Burnham Cancer Center’s Apoptosis and Cell Death Program, are putting on their 3D glasses. They recently teamed up with French company MEDIT SA to use and enhance a new software platform built around a computer program called MED-SuMo. This platform breaks down 3D images of known protein structures to find chemical fragments that might bind and inhibit Protein X (or other interesting proteins) in real life.

A Coming Together of Cancer Centers

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A group of top researchers from the University of Texas MD Anderson Cancer Center (MDACC) gathered with their Sanford-Burnham counterparts in La Jolla last week to seek ways the two Cancer Centers could collaborate to translate basic research into new medicines.

Soldiers or thugs?

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Sanford-Burnham CEO Dr. John Reed was quoted in a recent article at The Scientist.com that unwinds how the immune system dukes it out with invading pathogens. The article compares our immune response to the Facebook game Mafia Wars, and makes the case that this conflict more resembles an underworld turf battle than a military-style war. Dr. Reed notes that new technologies have helped us reach this enhanced understanding.

“There certainly has been a rapid pace of discovery in the area of the host–pathogen interaction,” agrees cell and molecular biologist John Reed of the Sanford-Burnham Medical Research Institute in La Jolla, Calif. Like many fields in the life sciences, he adds, the quickly advancing field of  “genomics is a big part of that.”